GitHub

StrainR2 stalls during BBMap mapping on InSilicoSeq-generated paired-end metagenomes (no ...

Hello, I am encountering a reproducible issue where StrainR2 stalls during the StrainR (BBMap) mapping step when using paired-end metagenomes generated with InSilicoSeq. The job does not error, but ...
GitHub

bbmap/jni java memory allocation issue

java -Djava.library.path=/aslab_scratch001/asboner_dat/PeterTest/software/fusionCatcher_v0.99.7b/fusioncatcher_v0.99.7b/fusioncatcher/tools/bbmap/jni/ -ea -Xmx42219m ...