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String::Splice - splice, but for Strings instead of Arrays

String::Splice is intended to give a simple interface to slicing and dicing Strings much in the same way that CORE Array.splice makes it easy to slice and dice Arrays. Works very similarly on strings ...
GitHub

Splicejunxchx is a Python pipeline that takes splice junctions outputed by STAR (SJ.out.tab) and a GTF file to characterize the 5' and 3' splice sites of a splice junction.

The 51 bases centered around each splice site (needs bedtools) The 2 bases of the 5'/3' ss (bedtools) maxEnt score (need to download maxEnt perl files) A phyloP score ...